- Lighter Than My Shadow by Katie Green (Lion Forge)
- Black Hammer Volume 1: Secret Origins by Jeff Lemire, Dean Ormston, and Dave Stewart (Dark Horse)
- Wonder Woman Volume 2: Year One (Rebirth) by Greg Rucka, Nicola Scott, and Romulo Fajardo Jr. (DC)
- Hostage by Guy Delisle (Drawn & Quarterly)
- My Favorite Thing Is Monsters by Emil Ferris (Fantagraphics)
- The Best We Could Do by Thi Bui (Abrams)
- Love Is Love, edited by Marc Andreyko, Sarah Gaydos, and Jamie S. Rich (IDW)
- Bitch Planet Volume 2: President Bitch by Kelly Sue DeConnick and Valentine De Landro (Image)
- Black Panther: A Nation Under Our Feet Book 2 by Ta-Nehisi Coates, Chris Sprouse, and Brian Stelfreeze (Marvel)
- The Legend of Zelda: Twilight Princess by Akira Himekawa (VIZ)
- My Brother’s Husband by Gengoroh Tagame (translated by Anne Ishii) (Pantheon)
- Everyone’s a Aliebn When Ur a Aliebn Too: A Book by Jomny Sun (Harper Perennial)
- Brave by Svetlana Chmakova (JY)
- Monstress Volume 2: The Blood by Marjorie Liu and Sana Takeda (Image)
- Comics for a Strange World: A Book of Poorly Drawn Lines by Reza Farazmand (Plume)
- Fetch: How a Bad Dog Brought Me Home by Nicole J. Georges (Mariner)
- The Tea Dragon Society by Katie O’Neill (Oni)
- Blitt by Barry Blitt (Riverhead)
- The Customer Is Always Wrong by Mimi Pond (Drawn & Quarterly)
- My Lesbian Experience with Loneliness by Nagata Kabi (Seven Seas)
- Dog Man: A Tale of Two Kitties by Dav Pilkey (Graphix) -- also listed in best books for ages 6-8
- Pashmina by Nidhi Chanani (First Second) -- also listed in best books for ages 9-12
The company’s picks for 2016 can be viewed here: “Amazon's Best Graphic Novels - 2016.”